Index

_

__init__() (harbor.analysis.cross_docking.BinaryEvaluation method) (harbor.analysis.cross_docking.ColumnFilter method) (harbor.analysis.cross_docking.ColumnSortFilter method) (harbor.analysis.cross_docking.CompositSettingsBase method) (harbor.analysis.cross_docking.DataFrameModel method) (harbor.analysis.cross_docking.DataFrameModelBase method) (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.DateSplit method) (harbor.analysis.cross_docking.DateSplitSettings method) (harbor.analysis.cross_docking.DockingDataModel method) (harbor.analysis.cross_docking.EmptyModel method) (harbor.analysis.cross_docking.Evaluator method) (harbor.analysis.cross_docking.EvaluatorFactory method) (harbor.analysis.cross_docking.EvaluatorSettingsBase method) (harbor.analysis.cross_docking.ModelBase method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.PairwiseSplitBase method) (harbor.analysis.cross_docking.PairwiseSplitSettings method) (harbor.analysis.cross_docking.PoseSelectionSettings method) (harbor.analysis.cross_docking.PoseSelector method) (harbor.analysis.cross_docking.POSITScorer method) (harbor.analysis.cross_docking.POSITScorerSettings method) (harbor.analysis.cross_docking.RandomSplit method) (harbor.analysis.cross_docking.RandomSplitSettings method) (harbor.analysis.cross_docking.ReferenceSplitSettings method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase method) (harbor.analysis.cross_docking.Results method) (harbor.analysis.cross_docking.RMSDScorer method) (harbor.analysis.cross_docking.RMSDScorerSettings method) (harbor.analysis.cross_docking.ScaffoldDateSplit method) (harbor.analysis.cross_docking.ScaffoldSplit method) (harbor.analysis.cross_docking.ScaffoldSplitFlags method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.analysis.cross_docking.ScaffoldSplitSettings method) (harbor.analysis.cross_docking.Scorer method) (harbor.analysis.cross_docking.ScorerSettings method) (harbor.analysis.cross_docking.SettingsBase method) (harbor.analysis.cross_docking.SimilaritySplit method) (harbor.analysis.cross_docking.SimilaritySplitSettings method) (harbor.analysis.cross_docking.SorterBase method) (harbor.analysis.cross_docking.SplitBase method) (harbor.analysis.cross_docking.SuccessRate method) (harbor.analysis.cross_docking.SuccessRateSettings method) (harbor.analysis.cross_docking.UpdateReferenceSettings method) (harbor.analysis.utils.FileLogger method) (harbor.loaders.Loader method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FingerprintLevel method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.InteractionScore method) (harbor.pli.plip_analysis_schema.InteractionType method) (harbor.pli.plip_analysis_schema.PLIntReport method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) (harbor.pli.plip_analysis_schema.SimilarityScore method) (harbor.schema.data.ActiveInactiveDataset method) (harbor.schema.data.Dataset method) (harbor.schema.data.Experiment method) (harbor.schema.data.Molecule method) (harbor.schema.data.MoleculePropertyType method) (harbor.schema.data.Prediction method) (harbor.schema.measurement_types.ExperimentalMeasurementType method) (harbor.schema.measurement_types.MeasurementType method) (harbor.schema.measurement_types.PredictedMeasurementType method)

A

ActiveInactiveDataset (class in harbor.schema.data) analyze_structure() (in module harbor.pli.calculate_plip_interactions)

apply_filters() (harbor.analysis.cross_docking.DockingDataModel method) AtomType (class in harbor.pli.plip_analysis_schema)

B

BinaryEvaluation (class in harbor.analysis.cross_docking)

C

calculate_fingerprint() (in module harbor.pli.plip_analysis_schema) calculate_tanimoto() (in module harbor.similarity.tanimoto) calculate_tversky() (in module harbor.pli.plip_analysis_schema) capitalize() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) casefold() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) center() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) check_columns_in_dataframe() (harbor.analysis.cross_docking.DockingDataModel method) check_interaction_counts() (harbor.pli.plip_analysis_schema.SimilarityScore class method) check_key_and_params_specify_unique_rows() (harbor.analysis.cross_docking.DataFrameModel method) check_score_range() (harbor.pli.plip_analysis_schema.SimilarityScore class method) collect_duplicates() (in module harbor.pli.plip_analysis_schema) ColumnFilter (class in harbor.analysis.cross_docking) ColumnSortFilter (class in harbor.analysis.cross_docking) CompositSettingsBase (class in harbor.analysis.cross_docking) copy() (harbor.analysis.cross_docking.BinaryEvaluation method) (harbor.analysis.cross_docking.ColumnFilter method) (harbor.analysis.cross_docking.ColumnSortFilter method) (harbor.analysis.cross_docking.CompositSettingsBase method) (harbor.analysis.cross_docking.DataFrameModel method) (harbor.analysis.cross_docking.DataFrameModelBase method) (harbor.analysis.cross_docking.DateSplit method) (harbor.analysis.cross_docking.DateSplitSettings method) (harbor.analysis.cross_docking.DockingDataModel method) (harbor.analysis.cross_docking.EmptyModel method) (harbor.analysis.cross_docking.Evaluator method) (harbor.analysis.cross_docking.EvaluatorFactory method) (harbor.analysis.cross_docking.EvaluatorSettingsBase method) (harbor.analysis.cross_docking.ModelBase method) (harbor.analysis.cross_docking.PairwiseSplitBase method) (harbor.analysis.cross_docking.PairwiseSplitSettings method) (harbor.analysis.cross_docking.PoseSelectionSettings method) (harbor.analysis.cross_docking.PoseSelector method) (harbor.analysis.cross_docking.POSITScorer method) (harbor.analysis.cross_docking.POSITScorerSettings method) (harbor.analysis.cross_docking.RandomSplit method) (harbor.analysis.cross_docking.RandomSplitSettings method) (harbor.analysis.cross_docking.ReferenceSplitSettings method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase method) (harbor.analysis.cross_docking.Results method) (harbor.analysis.cross_docking.RMSDScorer method) (harbor.analysis.cross_docking.RMSDScorerSettings method) (harbor.analysis.cross_docking.ScaffoldDateSplit method) (harbor.analysis.cross_docking.ScaffoldSplit method) (harbor.analysis.cross_docking.ScaffoldSplitSettings method) (harbor.analysis.cross_docking.Scorer method) (harbor.analysis.cross_docking.ScorerSettings method) (harbor.analysis.cross_docking.SettingsBase method) (harbor.analysis.cross_docking.SimilaritySplit method) (harbor.analysis.cross_docking.SimilaritySplitSettings method) (harbor.analysis.cross_docking.SorterBase method) (harbor.analysis.cross_docking.SplitBase method) (harbor.analysis.cross_docking.SuccessRate method) (harbor.analysis.cross_docking.SuccessRateSettings method) (harbor.analysis.cross_docking.UpdateReferenceSettings method) (harbor.loaders.Loader method) (harbor.pli.plip_analysis_schema.InteractionScore method) (harbor.pli.plip_analysis_schema.PLIntReport method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction method) (harbor.pli.plip_analysis_schema.SimilarityScore method) (harbor.schema.data.ActiveInactiveDataset method) (harbor.schema.data.Dataset method) (harbor.schema.data.Experiment method) (harbor.schema.data.Molecule method) (harbor.schema.data.Prediction method) (harbor.schema.measurement_types.ExperimentalMeasurementType method) (harbor.schema.measurement_types.MeasurementType method) (harbor.schema.measurement_types.PredictedMeasurementType method)

count() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) create_evaluators() (harbor.analysis.cross_docking.EvaluatorFactory method) create_pairwise_split() (harbor.analysis.cross_docking.EvaluatorFactory method) create_plot_with_error_bands_and_dual_legend() (in module harbor.plotting.plotly_utils) create_scorers() (harbor.analysis.cross_docking.EvaluatorFactory method)

D

DataFrameModel (class in harbor.analysis.cross_docking) DataFrameModelBase (class in harbor.analysis.cross_docking) DataFrameType (class in harbor.analysis.cross_docking)

Dataset (class in harbor.schema.data) DateSplit (class in harbor.analysis.cross_docking) DateSplitSettings (class in harbor.analysis.cross_docking) DockingDataModel (class in harbor.analysis.cross_docking)

E

EmptyModel (class in harbor.analysis.cross_docking) encode() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) endswith() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

Evaluator (class in harbor.analysis.cross_docking) EvaluatorFactory (class in harbor.analysis.cross_docking) EvaluatorSettingsBase (class in harbor.analysis.cross_docking) expandtabs() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) Experiment (class in harbor.schema.data) ExperimentalMeasurementType (class in harbor.schema.measurement_types)

F

FileLogger (class in harbor.analysis.utils) find() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) FingerprintLevel (class in harbor.pli.plip_analysis_schema) FormalCharge (class in harbor.pli.plip_analysis_schema) format() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

format_map() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) from_complex_path() (harbor.pli.plip_analysis_schema.PLIntReport class method) from_csv() (harbor.pli.plip_analysis_schema.PLIntReport class method)

G

generate_logarithmic_scale() (in module harbor.analysis.cross_docking) generate_random_samples() (in module harbor.analysis.cross_docking) get_ci_from_bootstraps() (in module harbor.analysis.utils) get_class_from_name() (in module harbor.analysis.cross_docking) get_fp() (in module harbor.descriptors.fingerprints)

get_groupby_columns() (harbor.analysis.cross_docking.DockingDataModel method) get_mcs_substructure() (in module harbor.similarity.mcss) get_n_to_n_mcs() (in module harbor.similarity.mcss) get_similarity_thresholds() (harbor.analysis.cross_docking.SimilaritySplitSettings method) get_unique_structures_randomized_by_date() (in module harbor.analysis.cross_docking)

H

harbor module harbor.analysis module harbor.analysis.cross_docking module harbor.analysis.utils module harbor.cli module harbor.clustering module harbor.descriptors module harbor.descriptors.fingerprints module harbor.loaders module harbor.pli module harbor.pli.calculate_plip_interactions module

harbor.pli.calculate_plip_score module harbor.pli.plip_analysis_schema module harbor.plotting module harbor.plotting.ligands module harbor.plotting.plotly_utils module harbor.schema module harbor.schema.data module harbor.schema.measurement_types module harbor.similarity module harbor.similarity.mcss module harbor.similarity.tanimoto module hex_to_rgb() (in module harbor.plotting.plotly_utils)

I

index() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) InteractionScore (class in harbor.pli.plip_analysis_schema) InteractionType (class in harbor.pli.plip_analysis_schema) isalnum() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isalpha() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isascii() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isdecimal() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isdigit() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isidentifier() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

islower() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isnumeric() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isprintable() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isspace() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) istitle() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) isupper() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

J

join() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

L

ljust() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) Loader (class in harbor.loaders) lower() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

lstrip() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

M

maketrans() (harbor.analysis.cross_docking.DataFrameType static method) (harbor.analysis.cross_docking.Operator static method) (harbor.analysis.cross_docking.ScaffoldSplitOptions static method) (harbor.pli.plip_analysis_schema.AtomType static method) (harbor.pli.plip_analysis_schema.FormalCharge static method) (harbor.pli.plip_analysis_schema.ProteinResidueType static method) MeasurementType (class in harbor.schema.measurement_types) merge_on_common_columns() (in module harbor.analysis.cross_docking) model_config (harbor.analysis.cross_docking.BinaryEvaluation attribute) (harbor.analysis.cross_docking.ColumnFilter attribute) (harbor.analysis.cross_docking.ColumnSortFilter attribute) (harbor.analysis.cross_docking.CompositSettingsBase attribute) (harbor.analysis.cross_docking.DataFrameModel attribute) (harbor.analysis.cross_docking.DataFrameModelBase attribute) (harbor.analysis.cross_docking.DateSplit attribute) (harbor.analysis.cross_docking.DateSplitSettings attribute) (harbor.analysis.cross_docking.DockingDataModel attribute) (harbor.analysis.cross_docking.EmptyModel attribute) (harbor.analysis.cross_docking.Evaluator attribute) (harbor.analysis.cross_docking.EvaluatorFactory attribute) (harbor.analysis.cross_docking.EvaluatorSettingsBase attribute) (harbor.analysis.cross_docking.ModelBase attribute) (harbor.analysis.cross_docking.PairwiseSplitBase attribute) (harbor.analysis.cross_docking.PairwiseSplitSettings attribute) (harbor.analysis.cross_docking.PoseSelectionSettings attribute) (harbor.analysis.cross_docking.PoseSelector attribute) (harbor.analysis.cross_docking.POSITScorer attribute) (harbor.analysis.cross_docking.POSITScorerSettings attribute) (harbor.analysis.cross_docking.RandomSplit attribute) (harbor.analysis.cross_docking.RandomSplitSettings attribute) (harbor.analysis.cross_docking.ReferenceSplitSettings attribute) (harbor.analysis.cross_docking.ReferenceStructureSplitBase attribute) (harbor.analysis.cross_docking.Results attribute) (harbor.analysis.cross_docking.RMSDScorer attribute) (harbor.analysis.cross_docking.RMSDScorerSettings attribute) (harbor.analysis.cross_docking.ScaffoldDateSplit attribute) (harbor.analysis.cross_docking.ScaffoldSplit attribute) (harbor.analysis.cross_docking.ScaffoldSplitSettings attribute) (harbor.analysis.cross_docking.Scorer attribute) (harbor.analysis.cross_docking.ScorerSettings attribute) (harbor.analysis.cross_docking.SettingsBase attribute) (harbor.analysis.cross_docking.SimilaritySplit attribute) (harbor.analysis.cross_docking.SimilaritySplitSettings attribute) (harbor.analysis.cross_docking.SorterBase attribute) (harbor.analysis.cross_docking.SplitBase attribute) (harbor.analysis.cross_docking.SuccessRate attribute) (harbor.analysis.cross_docking.SuccessRateSettings attribute) (harbor.analysis.cross_docking.UpdateReferenceSettings attribute) (harbor.loaders.Loader attribute) (harbor.pli.plip_analysis_schema.InteractionScore attribute) (harbor.pli.plip_analysis_schema.PLIntReport attribute) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction attribute) (harbor.pli.plip_analysis_schema.SimilarityScore attribute) (harbor.schema.data.ActiveInactiveDataset attribute) (harbor.schema.data.Dataset attribute) (harbor.schema.data.Experiment attribute) (harbor.schema.data.Molecule attribute) (harbor.schema.data.Prediction attribute) (harbor.schema.measurement_types.ExperimentalMeasurementType attribute) (harbor.schema.measurement_types.MeasurementType attribute) (harbor.schema.measurement_types.PredictedMeasurementType attribute) model_construct() (harbor.analysis.cross_docking.BinaryEvaluation class method) (harbor.analysis.cross_docking.ColumnFilter class method) (harbor.analysis.cross_docking.ColumnSortFilter class method) (harbor.analysis.cross_docking.CompositSettingsBase class method) (harbor.analysis.cross_docking.DataFrameModel class method) (harbor.analysis.cross_docking.DataFrameModelBase class method) (harbor.analysis.cross_docking.DateSplit class method) (harbor.analysis.cross_docking.DateSplitSettings class method) (harbor.analysis.cross_docking.DockingDataModel class method) (harbor.analysis.cross_docking.EmptyModel class method) (harbor.analysis.cross_docking.Evaluator class method) (harbor.analysis.cross_docking.EvaluatorFactory class method) (harbor.analysis.cross_docking.EvaluatorSettingsBase class method) (harbor.analysis.cross_docking.ModelBase class method) (harbor.analysis.cross_docking.PairwiseSplitBase class method) (harbor.analysis.cross_docking.PairwiseSplitSettings class method) (harbor.analysis.cross_docking.PoseSelectionSettings class method) (harbor.analysis.cross_docking.PoseSelector class method) (harbor.analysis.cross_docking.POSITScorer class method) (harbor.analysis.cross_docking.POSITScorerSettings class method) (harbor.analysis.cross_docking.RandomSplit class method) (harbor.analysis.cross_docking.RandomSplitSettings class method) (harbor.analysis.cross_docking.ReferenceSplitSettings class method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase class method) (harbor.analysis.cross_docking.Results class method) (harbor.analysis.cross_docking.RMSDScorer class method) (harbor.analysis.cross_docking.RMSDScorerSettings class method) (harbor.analysis.cross_docking.ScaffoldDateSplit class method) (harbor.analysis.cross_docking.ScaffoldSplit class method) (harbor.analysis.cross_docking.ScaffoldSplitSettings class method) (harbor.analysis.cross_docking.Scorer class method) (harbor.analysis.cross_docking.ScorerSettings class method) (harbor.analysis.cross_docking.SettingsBase class method) (harbor.analysis.cross_docking.SimilaritySplit class method) (harbor.analysis.cross_docking.SimilaritySplitSettings class method) (harbor.analysis.cross_docking.SorterBase class method) (harbor.analysis.cross_docking.SplitBase class method) (harbor.analysis.cross_docking.SuccessRate class method) (harbor.analysis.cross_docking.SuccessRateSettings class method) (harbor.analysis.cross_docking.UpdateReferenceSettings class method) (harbor.loaders.Loader class method) (harbor.pli.plip_analysis_schema.InteractionScore class method) (harbor.pli.plip_analysis_schema.PLIntReport class method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction class method) (harbor.pli.plip_analysis_schema.SimilarityScore class method) (harbor.schema.data.ActiveInactiveDataset class method) (harbor.schema.data.Dataset class method) (harbor.schema.data.Experiment class method) (harbor.schema.data.Molecule class method) (harbor.schema.data.Prediction class method) (harbor.schema.measurement_types.ExperimentalMeasurementType class method) (harbor.schema.measurement_types.MeasurementType class method) (harbor.schema.measurement_types.PredictedMeasurementType class method) model_copy() (harbor.analysis.cross_docking.BinaryEvaluation method) (harbor.analysis.cross_docking.ColumnFilter method) (harbor.analysis.cross_docking.ColumnSortFilter method) (harbor.analysis.cross_docking.CompositSettingsBase method) (harbor.analysis.cross_docking.DataFrameModel method) (harbor.analysis.cross_docking.DataFrameModelBase method) (harbor.analysis.cross_docking.DateSplit method) (harbor.analysis.cross_docking.DateSplitSettings method) (harbor.analysis.cross_docking.DockingDataModel method) (harbor.analysis.cross_docking.EmptyModel method) (harbor.analysis.cross_docking.Evaluator method) (harbor.analysis.cross_docking.EvaluatorFactory method) (harbor.analysis.cross_docking.EvaluatorSettingsBase method) (harbor.analysis.cross_docking.ModelBase method) (harbor.analysis.cross_docking.PairwiseSplitBase method) (harbor.analysis.cross_docking.PairwiseSplitSettings method) (harbor.analysis.cross_docking.PoseSelectionSettings method) (harbor.analysis.cross_docking.PoseSelector method) (harbor.analysis.cross_docking.POSITScorer method) (harbor.analysis.cross_docking.POSITScorerSettings method) (harbor.analysis.cross_docking.RandomSplit method) (harbor.analysis.cross_docking.RandomSplitSettings method) (harbor.analysis.cross_docking.ReferenceSplitSettings method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase method) (harbor.analysis.cross_docking.Results method) (harbor.analysis.cross_docking.RMSDScorer method) (harbor.analysis.cross_docking.RMSDScorerSettings method) (harbor.analysis.cross_docking.ScaffoldDateSplit method) (harbor.analysis.cross_docking.ScaffoldSplit method) (harbor.analysis.cross_docking.ScaffoldSplitSettings method) (harbor.analysis.cross_docking.Scorer method) (harbor.analysis.cross_docking.ScorerSettings method) (harbor.analysis.cross_docking.SettingsBase method) (harbor.analysis.cross_docking.SimilaritySplit method) (harbor.analysis.cross_docking.SimilaritySplitSettings method) (harbor.analysis.cross_docking.SorterBase method) (harbor.analysis.cross_docking.SplitBase method) (harbor.analysis.cross_docking.SuccessRate method) (harbor.analysis.cross_docking.SuccessRateSettings method) (harbor.analysis.cross_docking.UpdateReferenceSettings method) (harbor.loaders.Loader method) (harbor.pli.plip_analysis_schema.InteractionScore method) (harbor.pli.plip_analysis_schema.PLIntReport method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction method) (harbor.pli.plip_analysis_schema.SimilarityScore method) (harbor.schema.data.ActiveInactiveDataset method) (harbor.schema.data.Dataset method) (harbor.schema.data.Experiment method) (harbor.schema.data.Molecule method) (harbor.schema.data.Prediction method) (harbor.schema.measurement_types.ExperimentalMeasurementType method) (harbor.schema.measurement_types.MeasurementType method) (harbor.schema.measurement_types.PredictedMeasurementType method) model_dump() (harbor.analysis.cross_docking.BinaryEvaluation method) (harbor.analysis.cross_docking.ColumnFilter method) (harbor.analysis.cross_docking.ColumnSortFilter method) (harbor.analysis.cross_docking.CompositSettingsBase method) (harbor.analysis.cross_docking.DataFrameModel method) (harbor.analysis.cross_docking.DataFrameModelBase method) (harbor.analysis.cross_docking.DateSplit method) (harbor.analysis.cross_docking.DateSplitSettings method) (harbor.analysis.cross_docking.DockingDataModel method) (harbor.analysis.cross_docking.EmptyModel method) (harbor.analysis.cross_docking.Evaluator method) (harbor.analysis.cross_docking.EvaluatorFactory method) (harbor.analysis.cross_docking.EvaluatorSettingsBase method) (harbor.analysis.cross_docking.ModelBase method) (harbor.analysis.cross_docking.PairwiseSplitBase method) (harbor.analysis.cross_docking.PairwiseSplitSettings method) (harbor.analysis.cross_docking.PoseSelectionSettings method) (harbor.analysis.cross_docking.PoseSelector method) (harbor.analysis.cross_docking.POSITScorer method) (harbor.analysis.cross_docking.POSITScorerSettings method) (harbor.analysis.cross_docking.RandomSplit method) (harbor.analysis.cross_docking.RandomSplitSettings method) (harbor.analysis.cross_docking.ReferenceSplitSettings method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase method) (harbor.analysis.cross_docking.Results method) (harbor.analysis.cross_docking.RMSDScorer method) (harbor.analysis.cross_docking.RMSDScorerSettings method) (harbor.analysis.cross_docking.ScaffoldDateSplit method) (harbor.analysis.cross_docking.ScaffoldSplit method) (harbor.analysis.cross_docking.ScaffoldSplitSettings method) (harbor.analysis.cross_docking.Scorer method) (harbor.analysis.cross_docking.ScorerSettings method) (harbor.analysis.cross_docking.SettingsBase method) (harbor.analysis.cross_docking.SimilaritySplit method) (harbor.analysis.cross_docking.SimilaritySplitSettings method) (harbor.analysis.cross_docking.SorterBase method) (harbor.analysis.cross_docking.SplitBase method) (harbor.analysis.cross_docking.SuccessRate method) (harbor.analysis.cross_docking.SuccessRateSettings method) (harbor.analysis.cross_docking.UpdateReferenceSettings method) (harbor.loaders.Loader method) (harbor.pli.plip_analysis_schema.InteractionScore method) (harbor.pli.plip_analysis_schema.PLIntReport method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction method) (harbor.pli.plip_analysis_schema.SimilarityScore method) (harbor.schema.data.ActiveInactiveDataset method) (harbor.schema.data.Dataset method) (harbor.schema.data.Experiment method) (harbor.schema.data.Molecule method) (harbor.schema.data.Prediction method) (harbor.schema.measurement_types.ExperimentalMeasurementType method) (harbor.schema.measurement_types.MeasurementType method) (harbor.schema.measurement_types.PredictedMeasurementType method) model_dump_json() (harbor.analysis.cross_docking.BinaryEvaluation method) (harbor.analysis.cross_docking.ColumnFilter method) (harbor.analysis.cross_docking.ColumnSortFilter method) (harbor.analysis.cross_docking.CompositSettingsBase method) (harbor.analysis.cross_docking.DataFrameModel method) (harbor.analysis.cross_docking.DataFrameModelBase method) (harbor.analysis.cross_docking.DateSplit method) (harbor.analysis.cross_docking.DateSplitSettings method) (harbor.analysis.cross_docking.DockingDataModel method) (harbor.analysis.cross_docking.EmptyModel method) (harbor.analysis.cross_docking.Evaluator method) (harbor.analysis.cross_docking.EvaluatorFactory method) (harbor.analysis.cross_docking.EvaluatorSettingsBase method) (harbor.analysis.cross_docking.ModelBase method) (harbor.analysis.cross_docking.PairwiseSplitBase method) (harbor.analysis.cross_docking.PairwiseSplitSettings method) (harbor.analysis.cross_docking.PoseSelectionSettings method) (harbor.analysis.cross_docking.PoseSelector method) (harbor.analysis.cross_docking.POSITScorer method) (harbor.analysis.cross_docking.POSITScorerSettings method) (harbor.analysis.cross_docking.RandomSplit method) (harbor.analysis.cross_docking.RandomSplitSettings method) (harbor.analysis.cross_docking.ReferenceSplitSettings method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase method) (harbor.analysis.cross_docking.Results method) (harbor.analysis.cross_docking.RMSDScorer method) (harbor.analysis.cross_docking.RMSDScorerSettings method) (harbor.analysis.cross_docking.ScaffoldDateSplit method) (harbor.analysis.cross_docking.ScaffoldSplit method) (harbor.analysis.cross_docking.ScaffoldSplitSettings method) (harbor.analysis.cross_docking.Scorer method) (harbor.analysis.cross_docking.ScorerSettings method) (harbor.analysis.cross_docking.SettingsBase method) (harbor.analysis.cross_docking.SimilaritySplit method) (harbor.analysis.cross_docking.SimilaritySplitSettings method) (harbor.analysis.cross_docking.SorterBase method) (harbor.analysis.cross_docking.SplitBase method) (harbor.analysis.cross_docking.SuccessRate method) (harbor.analysis.cross_docking.SuccessRateSettings method) (harbor.analysis.cross_docking.UpdateReferenceSettings method) (harbor.loaders.Loader method) (harbor.pli.plip_analysis_schema.InteractionScore method) (harbor.pli.plip_analysis_schema.PLIntReport method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction method) (harbor.pli.plip_analysis_schema.SimilarityScore method) (harbor.schema.data.ActiveInactiveDataset method) (harbor.schema.data.Dataset method) (harbor.schema.data.Experiment method) (harbor.schema.data.Molecule method) (harbor.schema.data.Prediction method) (harbor.schema.measurement_types.ExperimentalMeasurementType method) (harbor.schema.measurement_types.MeasurementType method) (harbor.schema.measurement_types.PredictedMeasurementType method) model_extra (harbor.analysis.cross_docking.BinaryEvaluation property) (harbor.analysis.cross_docking.ColumnFilter property) (harbor.analysis.cross_docking.ColumnSortFilter property) (harbor.analysis.cross_docking.CompositSettingsBase property) (harbor.analysis.cross_docking.DataFrameModel property) (harbor.analysis.cross_docking.DataFrameModelBase property) (harbor.analysis.cross_docking.DateSplit property) (harbor.analysis.cross_docking.DateSplitSettings property) (harbor.analysis.cross_docking.DockingDataModel property) (harbor.analysis.cross_docking.EmptyModel property) (harbor.analysis.cross_docking.Evaluator property) (harbor.analysis.cross_docking.EvaluatorFactory property) (harbor.analysis.cross_docking.EvaluatorSettingsBase property) (harbor.analysis.cross_docking.ModelBase property) (harbor.analysis.cross_docking.PairwiseSplitBase property) (harbor.analysis.cross_docking.PairwiseSplitSettings property) (harbor.analysis.cross_docking.PoseSelectionSettings property) (harbor.analysis.cross_docking.PoseSelector property) (harbor.analysis.cross_docking.POSITScorer property) (harbor.analysis.cross_docking.POSITScorerSettings property) (harbor.analysis.cross_docking.RandomSplit property) (harbor.analysis.cross_docking.RandomSplitSettings property) (harbor.analysis.cross_docking.ReferenceSplitSettings property) (harbor.analysis.cross_docking.ReferenceStructureSplitBase property) (harbor.analysis.cross_docking.Results property) (harbor.analysis.cross_docking.RMSDScorer property) (harbor.analysis.cross_docking.RMSDScorerSettings property) (harbor.analysis.cross_docking.ScaffoldDateSplit property) (harbor.analysis.cross_docking.ScaffoldSplit property) (harbor.analysis.cross_docking.ScaffoldSplitSettings property) (harbor.analysis.cross_docking.Scorer property) (harbor.analysis.cross_docking.ScorerSettings property) (harbor.analysis.cross_docking.SettingsBase property) (harbor.analysis.cross_docking.SimilaritySplit property) (harbor.analysis.cross_docking.SimilaritySplitSettings property) (harbor.analysis.cross_docking.SorterBase property) (harbor.analysis.cross_docking.SplitBase property) (harbor.analysis.cross_docking.SuccessRate property) (harbor.analysis.cross_docking.SuccessRateSettings property) (harbor.analysis.cross_docking.UpdateReferenceSettings property) (harbor.loaders.Loader property) (harbor.pli.plip_analysis_schema.InteractionScore property) (harbor.pli.plip_analysis_schema.PLIntReport property) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction property) (harbor.pli.plip_analysis_schema.SimilarityScore property) (harbor.schema.data.ActiveInactiveDataset property) (harbor.schema.data.Dataset property) (harbor.schema.data.Experiment property) (harbor.schema.data.Molecule property) (harbor.schema.data.Prediction property) (harbor.schema.measurement_types.ExperimentalMeasurementType property) (harbor.schema.measurement_types.MeasurementType property) (harbor.schema.measurement_types.PredictedMeasurementType property) model_fields_set (harbor.analysis.cross_docking.BinaryEvaluation property) (harbor.analysis.cross_docking.ColumnFilter property) (harbor.analysis.cross_docking.ColumnSortFilter property) (harbor.analysis.cross_docking.CompositSettingsBase property) (harbor.analysis.cross_docking.DataFrameModel property) (harbor.analysis.cross_docking.DataFrameModelBase property) (harbor.analysis.cross_docking.DateSplit property) (harbor.analysis.cross_docking.DateSplitSettings property) (harbor.analysis.cross_docking.DockingDataModel property) (harbor.analysis.cross_docking.EmptyModel property) (harbor.analysis.cross_docking.Evaluator property) (harbor.analysis.cross_docking.EvaluatorFactory property) (harbor.analysis.cross_docking.EvaluatorSettingsBase property) (harbor.analysis.cross_docking.ModelBase property) (harbor.analysis.cross_docking.PairwiseSplitBase property) (harbor.analysis.cross_docking.PairwiseSplitSettings property) (harbor.analysis.cross_docking.PoseSelectionSettings property) (harbor.analysis.cross_docking.PoseSelector property) (harbor.analysis.cross_docking.POSITScorer property) (harbor.analysis.cross_docking.POSITScorerSettings property) (harbor.analysis.cross_docking.RandomSplit property) (harbor.analysis.cross_docking.RandomSplitSettings property) (harbor.analysis.cross_docking.ReferenceSplitSettings property) (harbor.analysis.cross_docking.ReferenceStructureSplitBase property) (harbor.analysis.cross_docking.Results property) (harbor.analysis.cross_docking.RMSDScorer property) (harbor.analysis.cross_docking.RMSDScorerSettings property) (harbor.analysis.cross_docking.ScaffoldDateSplit property) (harbor.analysis.cross_docking.ScaffoldSplit property) (harbor.analysis.cross_docking.ScaffoldSplitSettings property) (harbor.analysis.cross_docking.Scorer property) (harbor.analysis.cross_docking.ScorerSettings property) (harbor.analysis.cross_docking.SettingsBase property) (harbor.analysis.cross_docking.SimilaritySplit property) (harbor.analysis.cross_docking.SimilaritySplitSettings property) (harbor.analysis.cross_docking.SorterBase property) (harbor.analysis.cross_docking.SplitBase property) (harbor.analysis.cross_docking.SuccessRate property) (harbor.analysis.cross_docking.SuccessRateSettings property) (harbor.analysis.cross_docking.UpdateReferenceSettings property) (harbor.loaders.Loader property) (harbor.pli.plip_analysis_schema.InteractionScore property) (harbor.pli.plip_analysis_schema.PLIntReport property) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction property) (harbor.pli.plip_analysis_schema.SimilarityScore property) (harbor.schema.data.ActiveInactiveDataset property) (harbor.schema.data.Dataset property) (harbor.schema.data.Experiment property) (harbor.schema.data.Molecule property) (harbor.schema.data.Prediction property) (harbor.schema.measurement_types.ExperimentalMeasurementType property) (harbor.schema.measurement_types.MeasurementType property) (harbor.schema.measurement_types.PredictedMeasurementType property) model_json_schema() (harbor.analysis.cross_docking.BinaryEvaluation class method) (harbor.analysis.cross_docking.ColumnFilter class method) (harbor.analysis.cross_docking.ColumnSortFilter class method) (harbor.analysis.cross_docking.CompositSettingsBase class method) (harbor.analysis.cross_docking.DataFrameModel class method) (harbor.analysis.cross_docking.DataFrameModelBase class method) (harbor.analysis.cross_docking.DateSplit class method) (harbor.analysis.cross_docking.DateSplitSettings class method) (harbor.analysis.cross_docking.DockingDataModel class method) (harbor.analysis.cross_docking.EmptyModel class method) (harbor.analysis.cross_docking.Evaluator class method) (harbor.analysis.cross_docking.EvaluatorFactory class method) (harbor.analysis.cross_docking.EvaluatorSettingsBase class method) (harbor.analysis.cross_docking.ModelBase class method) (harbor.analysis.cross_docking.PairwiseSplitBase class method) (harbor.analysis.cross_docking.PairwiseSplitSettings class method) (harbor.analysis.cross_docking.PoseSelectionSettings class method) (harbor.analysis.cross_docking.PoseSelector class method) (harbor.analysis.cross_docking.POSITScorer class method) (harbor.analysis.cross_docking.POSITScorerSettings class method) (harbor.analysis.cross_docking.RandomSplit class method) (harbor.analysis.cross_docking.RandomSplitSettings class method) (harbor.analysis.cross_docking.ReferenceSplitSettings class method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase class method) (harbor.analysis.cross_docking.Results class method) (harbor.analysis.cross_docking.RMSDScorer class method) (harbor.analysis.cross_docking.RMSDScorerSettings class method) (harbor.analysis.cross_docking.ScaffoldDateSplit class method) (harbor.analysis.cross_docking.ScaffoldSplit class method) (harbor.analysis.cross_docking.ScaffoldSplitSettings class method) (harbor.analysis.cross_docking.Scorer class method) (harbor.analysis.cross_docking.ScorerSettings class method) (harbor.analysis.cross_docking.SettingsBase class method) (harbor.analysis.cross_docking.SimilaritySplit class method) (harbor.analysis.cross_docking.SimilaritySplitSettings class method) (harbor.analysis.cross_docking.SorterBase class method) (harbor.analysis.cross_docking.SplitBase class method) (harbor.analysis.cross_docking.SuccessRate class method) (harbor.analysis.cross_docking.SuccessRateSettings class method) (harbor.analysis.cross_docking.UpdateReferenceSettings class method) (harbor.loaders.Loader class method) (harbor.pli.plip_analysis_schema.InteractionScore class method) (harbor.pli.plip_analysis_schema.PLIntReport class method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction class method) (harbor.pli.plip_analysis_schema.SimilarityScore class method) (harbor.schema.data.ActiveInactiveDataset class method) (harbor.schema.data.Dataset class method) (harbor.schema.data.Experiment class method) (harbor.schema.data.Molecule class method) (harbor.schema.data.Prediction class method) (harbor.schema.measurement_types.ExperimentalMeasurementType class method) (harbor.schema.measurement_types.MeasurementType class method) (harbor.schema.measurement_types.PredictedMeasurementType class method)

model_parametrized_name() (harbor.analysis.cross_docking.BinaryEvaluation class method) (harbor.analysis.cross_docking.ColumnFilter class method) (harbor.analysis.cross_docking.ColumnSortFilter class method) (harbor.analysis.cross_docking.CompositSettingsBase class method) (harbor.analysis.cross_docking.DataFrameModel class method) (harbor.analysis.cross_docking.DataFrameModelBase class method) (harbor.analysis.cross_docking.DateSplit class method) (harbor.analysis.cross_docking.DateSplitSettings class method) (harbor.analysis.cross_docking.DockingDataModel class method) (harbor.analysis.cross_docking.EmptyModel class method) (harbor.analysis.cross_docking.Evaluator class method) (harbor.analysis.cross_docking.EvaluatorFactory class method) (harbor.analysis.cross_docking.EvaluatorSettingsBase class method) (harbor.analysis.cross_docking.ModelBase class method) (harbor.analysis.cross_docking.PairwiseSplitBase class method) (harbor.analysis.cross_docking.PairwiseSplitSettings class method) (harbor.analysis.cross_docking.PoseSelectionSettings class method) (harbor.analysis.cross_docking.PoseSelector class method) (harbor.analysis.cross_docking.POSITScorer class method) (harbor.analysis.cross_docking.POSITScorerSettings class method) (harbor.analysis.cross_docking.RandomSplit class method) (harbor.analysis.cross_docking.RandomSplitSettings class method) (harbor.analysis.cross_docking.ReferenceSplitSettings class method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase class method) (harbor.analysis.cross_docking.Results class method) (harbor.analysis.cross_docking.RMSDScorer class method) (harbor.analysis.cross_docking.RMSDScorerSettings class method) (harbor.analysis.cross_docking.ScaffoldDateSplit class method) (harbor.analysis.cross_docking.ScaffoldSplit class method) (harbor.analysis.cross_docking.ScaffoldSplitSettings class method) (harbor.analysis.cross_docking.Scorer class method) (harbor.analysis.cross_docking.ScorerSettings class method) (harbor.analysis.cross_docking.SettingsBase class method) (harbor.analysis.cross_docking.SimilaritySplit class method) (harbor.analysis.cross_docking.SimilaritySplitSettings class method) (harbor.analysis.cross_docking.SorterBase class method) (harbor.analysis.cross_docking.SplitBase class method) (harbor.analysis.cross_docking.SuccessRate class method) (harbor.analysis.cross_docking.SuccessRateSettings class method) (harbor.analysis.cross_docking.UpdateReferenceSettings class method) (harbor.loaders.Loader class method) (harbor.pli.plip_analysis_schema.InteractionScore class method) (harbor.pli.plip_analysis_schema.PLIntReport class method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction class method) (harbor.pli.plip_analysis_schema.SimilarityScore class method) (harbor.schema.data.ActiveInactiveDataset class method) (harbor.schema.data.Dataset class method) (harbor.schema.data.Experiment class method) (harbor.schema.data.Molecule class method) (harbor.schema.data.Prediction class method) (harbor.schema.measurement_types.ExperimentalMeasurementType class method) (harbor.schema.measurement_types.MeasurementType class method) (harbor.schema.measurement_types.PredictedMeasurementType class method) model_post_init() (harbor.analysis.cross_docking.BinaryEvaluation method) (harbor.analysis.cross_docking.ColumnFilter method) (harbor.analysis.cross_docking.ColumnSortFilter method) (harbor.analysis.cross_docking.CompositSettingsBase method) (harbor.analysis.cross_docking.DataFrameModel method) (harbor.analysis.cross_docking.DataFrameModelBase method) (harbor.analysis.cross_docking.DateSplit method) (harbor.analysis.cross_docking.DateSplitSettings method) (harbor.analysis.cross_docking.DockingDataModel method) (harbor.analysis.cross_docking.EmptyModel method) (harbor.analysis.cross_docking.Evaluator method) (harbor.analysis.cross_docking.EvaluatorFactory method) (harbor.analysis.cross_docking.EvaluatorSettingsBase method) (harbor.analysis.cross_docking.ModelBase method) (harbor.analysis.cross_docking.PairwiseSplitBase method) (harbor.analysis.cross_docking.PairwiseSplitSettings method) (harbor.analysis.cross_docking.PoseSelectionSettings method) (harbor.analysis.cross_docking.PoseSelector method) (harbor.analysis.cross_docking.POSITScorer method) (harbor.analysis.cross_docking.POSITScorerSettings method) (harbor.analysis.cross_docking.RandomSplit method) (harbor.analysis.cross_docking.RandomSplitSettings method) (harbor.analysis.cross_docking.ReferenceSplitSettings method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase method) (harbor.analysis.cross_docking.Results method) (harbor.analysis.cross_docking.RMSDScorer method) (harbor.analysis.cross_docking.RMSDScorerSettings method) (harbor.analysis.cross_docking.ScaffoldDateSplit method) (harbor.analysis.cross_docking.ScaffoldSplit method) (harbor.analysis.cross_docking.ScaffoldSplitSettings method) (harbor.analysis.cross_docking.Scorer method) (harbor.analysis.cross_docking.ScorerSettings method) (harbor.analysis.cross_docking.SettingsBase method) (harbor.analysis.cross_docking.SimilaritySplit method) (harbor.analysis.cross_docking.SimilaritySplitSettings method) (harbor.analysis.cross_docking.SorterBase method) (harbor.analysis.cross_docking.SplitBase method) (harbor.analysis.cross_docking.SuccessRate method) (harbor.analysis.cross_docking.SuccessRateSettings method) (harbor.analysis.cross_docking.UpdateReferenceSettings method) (harbor.loaders.Loader method) (harbor.pli.plip_analysis_schema.InteractionScore method) (harbor.pli.plip_analysis_schema.PLIntReport method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction method) (harbor.pli.plip_analysis_schema.SimilarityScore method) (harbor.schema.data.ActiveInactiveDataset method) (harbor.schema.data.Dataset method) (harbor.schema.data.Experiment method) (harbor.schema.data.Molecule method) (harbor.schema.data.Prediction method) (harbor.schema.measurement_types.ExperimentalMeasurementType method) (harbor.schema.measurement_types.MeasurementType method) (harbor.schema.measurement_types.PredictedMeasurementType method) model_rebuild() (harbor.analysis.cross_docking.BinaryEvaluation class method) (harbor.analysis.cross_docking.ColumnFilter class method) (harbor.analysis.cross_docking.ColumnSortFilter class method) (harbor.analysis.cross_docking.CompositSettingsBase class method) (harbor.analysis.cross_docking.DataFrameModel class method) (harbor.analysis.cross_docking.DataFrameModelBase class method) (harbor.analysis.cross_docking.DateSplit class method) (harbor.analysis.cross_docking.DateSplitSettings class method) (harbor.analysis.cross_docking.DockingDataModel class method) (harbor.analysis.cross_docking.EmptyModel class method) (harbor.analysis.cross_docking.Evaluator class method) (harbor.analysis.cross_docking.EvaluatorFactory class method) (harbor.analysis.cross_docking.EvaluatorSettingsBase class method) (harbor.analysis.cross_docking.ModelBase class method) (harbor.analysis.cross_docking.PairwiseSplitBase class method) (harbor.analysis.cross_docking.PairwiseSplitSettings class method) (harbor.analysis.cross_docking.PoseSelectionSettings class method) (harbor.analysis.cross_docking.PoseSelector class method) (harbor.analysis.cross_docking.POSITScorer class method) (harbor.analysis.cross_docking.POSITScorerSettings class method) (harbor.analysis.cross_docking.RandomSplit class method) (harbor.analysis.cross_docking.RandomSplitSettings class method) (harbor.analysis.cross_docking.ReferenceSplitSettings class method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase class method) (harbor.analysis.cross_docking.Results class method) (harbor.analysis.cross_docking.RMSDScorer class method) (harbor.analysis.cross_docking.RMSDScorerSettings class method) (harbor.analysis.cross_docking.ScaffoldDateSplit class method) (harbor.analysis.cross_docking.ScaffoldSplit class method) (harbor.analysis.cross_docking.ScaffoldSplitSettings class method) (harbor.analysis.cross_docking.Scorer class method) (harbor.analysis.cross_docking.ScorerSettings class method) (harbor.analysis.cross_docking.SettingsBase class method) (harbor.analysis.cross_docking.SimilaritySplit class method) (harbor.analysis.cross_docking.SimilaritySplitSettings class method) (harbor.analysis.cross_docking.SorterBase class method) (harbor.analysis.cross_docking.SplitBase class method) (harbor.analysis.cross_docking.SuccessRate class method) (harbor.analysis.cross_docking.SuccessRateSettings class method) (harbor.analysis.cross_docking.UpdateReferenceSettings class method) (harbor.loaders.Loader class method) (harbor.pli.plip_analysis_schema.InteractionScore class method) (harbor.pli.plip_analysis_schema.PLIntReport class method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction class method) (harbor.pli.plip_analysis_schema.SimilarityScore class method) (harbor.schema.data.ActiveInactiveDataset class method) (harbor.schema.data.Dataset class method) (harbor.schema.data.Experiment class method) (harbor.schema.data.Molecule class method) (harbor.schema.data.Prediction class method) (harbor.schema.measurement_types.ExperimentalMeasurementType class method) (harbor.schema.measurement_types.MeasurementType class method) (harbor.schema.measurement_types.PredictedMeasurementType class method) model_validate() (harbor.analysis.cross_docking.BinaryEvaluation class method) (harbor.analysis.cross_docking.ColumnFilter class method) (harbor.analysis.cross_docking.ColumnSortFilter class method) (harbor.analysis.cross_docking.CompositSettingsBase class method) (harbor.analysis.cross_docking.DataFrameModel class method) (harbor.analysis.cross_docking.DataFrameModelBase class method) (harbor.analysis.cross_docking.DateSplit class method) (harbor.analysis.cross_docking.DateSplitSettings class method) (harbor.analysis.cross_docking.DockingDataModel class method) (harbor.analysis.cross_docking.EmptyModel class method) (harbor.analysis.cross_docking.Evaluator class method) (harbor.analysis.cross_docking.EvaluatorFactory class method) (harbor.analysis.cross_docking.EvaluatorSettingsBase class method) (harbor.analysis.cross_docking.ModelBase class method) (harbor.analysis.cross_docking.PairwiseSplitBase class method) (harbor.analysis.cross_docking.PairwiseSplitSettings class method) (harbor.analysis.cross_docking.PoseSelectionSettings class method) (harbor.analysis.cross_docking.PoseSelector class method) (harbor.analysis.cross_docking.POSITScorer class method) (harbor.analysis.cross_docking.POSITScorerSettings class method) (harbor.analysis.cross_docking.RandomSplit class method) (harbor.analysis.cross_docking.RandomSplitSettings class method) (harbor.analysis.cross_docking.ReferenceSplitSettings class method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase class method) (harbor.analysis.cross_docking.Results class method) (harbor.analysis.cross_docking.RMSDScorer class method) (harbor.analysis.cross_docking.RMSDScorerSettings class method) (harbor.analysis.cross_docking.ScaffoldDateSplit class method) (harbor.analysis.cross_docking.ScaffoldSplit class method) (harbor.analysis.cross_docking.ScaffoldSplitSettings class method) (harbor.analysis.cross_docking.Scorer class method) (harbor.analysis.cross_docking.ScorerSettings class method) (harbor.analysis.cross_docking.SettingsBase class method) (harbor.analysis.cross_docking.SimilaritySplit class method) (harbor.analysis.cross_docking.SimilaritySplitSettings class method) (harbor.analysis.cross_docking.SorterBase class method) (harbor.analysis.cross_docking.SplitBase class method) (harbor.analysis.cross_docking.SuccessRate class method) (harbor.analysis.cross_docking.SuccessRateSettings class method) (harbor.analysis.cross_docking.UpdateReferenceSettings class method) (harbor.loaders.Loader class method) (harbor.pli.plip_analysis_schema.InteractionScore class method) (harbor.pli.plip_analysis_schema.PLIntReport class method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction class method) (harbor.pli.plip_analysis_schema.SimilarityScore class method) (harbor.schema.data.ActiveInactiveDataset class method) (harbor.schema.data.Dataset class method) (harbor.schema.data.Experiment class method) (harbor.schema.data.Molecule class method) (harbor.schema.data.Prediction class method) (harbor.schema.measurement_types.ExperimentalMeasurementType class method) (harbor.schema.measurement_types.MeasurementType class method) (harbor.schema.measurement_types.PredictedMeasurementType class method) model_validate_json() (harbor.analysis.cross_docking.BinaryEvaluation class method) (harbor.analysis.cross_docking.ColumnFilter class method) (harbor.analysis.cross_docking.ColumnSortFilter class method) (harbor.analysis.cross_docking.CompositSettingsBase class method) (harbor.analysis.cross_docking.DataFrameModel class method) (harbor.analysis.cross_docking.DataFrameModelBase class method) (harbor.analysis.cross_docking.DateSplit class method) (harbor.analysis.cross_docking.DateSplitSettings class method) (harbor.analysis.cross_docking.DockingDataModel class method) (harbor.analysis.cross_docking.EmptyModel class method) (harbor.analysis.cross_docking.Evaluator class method) (harbor.analysis.cross_docking.EvaluatorFactory class method) (harbor.analysis.cross_docking.EvaluatorSettingsBase class method) (harbor.analysis.cross_docking.ModelBase class method) (harbor.analysis.cross_docking.PairwiseSplitBase class method) (harbor.analysis.cross_docking.PairwiseSplitSettings class method) (harbor.analysis.cross_docking.PoseSelectionSettings class method) (harbor.analysis.cross_docking.PoseSelector class method) (harbor.analysis.cross_docking.POSITScorer class method) (harbor.analysis.cross_docking.POSITScorerSettings class method) (harbor.analysis.cross_docking.RandomSplit class method) (harbor.analysis.cross_docking.RandomSplitSettings class method) (harbor.analysis.cross_docking.ReferenceSplitSettings class method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase class method) (harbor.analysis.cross_docking.Results class method) (harbor.analysis.cross_docking.RMSDScorer class method) (harbor.analysis.cross_docking.RMSDScorerSettings class method) (harbor.analysis.cross_docking.ScaffoldDateSplit class method) (harbor.analysis.cross_docking.ScaffoldSplit class method) (harbor.analysis.cross_docking.ScaffoldSplitSettings class method) (harbor.analysis.cross_docking.Scorer class method) (harbor.analysis.cross_docking.ScorerSettings class method) (harbor.analysis.cross_docking.SettingsBase class method) (harbor.analysis.cross_docking.SimilaritySplit class method) (harbor.analysis.cross_docking.SimilaritySplitSettings class method) (harbor.analysis.cross_docking.SorterBase class method) (harbor.analysis.cross_docking.SplitBase class method) (harbor.analysis.cross_docking.SuccessRate class method) (harbor.analysis.cross_docking.SuccessRateSettings class method) (harbor.analysis.cross_docking.UpdateReferenceSettings class method) (harbor.loaders.Loader class method) (harbor.pli.plip_analysis_schema.InteractionScore class method) (harbor.pli.plip_analysis_schema.PLIntReport class method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction class method) (harbor.pli.plip_analysis_schema.SimilarityScore class method) (harbor.schema.data.ActiveInactiveDataset class method) (harbor.schema.data.Dataset class method) (harbor.schema.data.Experiment class method) (harbor.schema.data.Molecule class method) (harbor.schema.data.Prediction class method) (harbor.schema.measurement_types.ExperimentalMeasurementType class method) (harbor.schema.measurement_types.MeasurementType class method) (harbor.schema.measurement_types.PredictedMeasurementType class method) model_validate_strings() (harbor.analysis.cross_docking.BinaryEvaluation class method) (harbor.analysis.cross_docking.ColumnFilter class method) (harbor.analysis.cross_docking.ColumnSortFilter class method) (harbor.analysis.cross_docking.CompositSettingsBase class method) (harbor.analysis.cross_docking.DataFrameModel class method) (harbor.analysis.cross_docking.DataFrameModelBase class method) (harbor.analysis.cross_docking.DateSplit class method) (harbor.analysis.cross_docking.DateSplitSettings class method) (harbor.analysis.cross_docking.DockingDataModel class method) (harbor.analysis.cross_docking.EmptyModel class method) (harbor.analysis.cross_docking.Evaluator class method) (harbor.analysis.cross_docking.EvaluatorFactory class method) (harbor.analysis.cross_docking.EvaluatorSettingsBase class method) (harbor.analysis.cross_docking.ModelBase class method) (harbor.analysis.cross_docking.PairwiseSplitBase class method) (harbor.analysis.cross_docking.PairwiseSplitSettings class method) (harbor.analysis.cross_docking.PoseSelectionSettings class method) (harbor.analysis.cross_docking.PoseSelector class method) (harbor.analysis.cross_docking.POSITScorer class method) (harbor.analysis.cross_docking.POSITScorerSettings class method) (harbor.analysis.cross_docking.RandomSplit class method) (harbor.analysis.cross_docking.RandomSplitSettings class method) (harbor.analysis.cross_docking.ReferenceSplitSettings class method) (harbor.analysis.cross_docking.ReferenceStructureSplitBase class method) (harbor.analysis.cross_docking.Results class method) (harbor.analysis.cross_docking.RMSDScorer class method) (harbor.analysis.cross_docking.RMSDScorerSettings class method) (harbor.analysis.cross_docking.ScaffoldDateSplit class method) (harbor.analysis.cross_docking.ScaffoldSplit class method) (harbor.analysis.cross_docking.ScaffoldSplitSettings class method) (harbor.analysis.cross_docking.Scorer class method) (harbor.analysis.cross_docking.ScorerSettings class method) (harbor.analysis.cross_docking.SettingsBase class method) (harbor.analysis.cross_docking.SimilaritySplit class method) (harbor.analysis.cross_docking.SimilaritySplitSettings class method) (harbor.analysis.cross_docking.SorterBase class method) (harbor.analysis.cross_docking.SplitBase class method) (harbor.analysis.cross_docking.SuccessRate class method) (harbor.analysis.cross_docking.SuccessRateSettings class method) (harbor.analysis.cross_docking.UpdateReferenceSettings class method) (harbor.loaders.Loader class method) (harbor.pli.plip_analysis_schema.InteractionScore class method) (harbor.pli.plip_analysis_schema.PLIntReport class method) (harbor.pli.plip_analysis_schema.ProteinLigandInteraction class method) (harbor.pli.plip_analysis_schema.SimilarityScore class method) (harbor.schema.data.ActiveInactiveDataset class method) (harbor.schema.data.Dataset class method) (harbor.schema.data.Experiment class method) (harbor.schema.data.Molecule class method) (harbor.schema.data.Prediction class method) (harbor.schema.measurement_types.ExperimentalMeasurementType class method) (harbor.schema.measurement_types.MeasurementType class method) (harbor.schema.measurement_types.PredictedMeasurementType class method) ModelBase (class in harbor.analysis.cross_docking) module harbor harbor.analysis harbor.analysis.cross_docking harbor.analysis.utils harbor.cli harbor.clustering harbor.descriptors harbor.descriptors.fingerprints harbor.loaders harbor.pli harbor.pli.calculate_plip_interactions harbor.pli.calculate_plip_score harbor.pli.plip_analysis_schema harbor.plotting harbor.plotting.ligands harbor.plotting.plotly_utils harbor.schema harbor.schema.data harbor.schema.measurement_types harbor.similarity harbor.similarity.mcss harbor.similarity.tanimoto Molecule (class in harbor.schema.data) MoleculePropertyType (class in harbor.schema.data)

O

Operator (class in harbor.analysis.cross_docking)

P

PairwiseSplitBase (class in harbor.analysis.cross_docking) PairwiseSplitSettings (class in harbor.analysis.cross_docking) partition() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) PLIntReport (class in harbor.pli.plip_analysis_schema) plip_constructor() (in module harbor.pli.plip_analysis_schema) plot_aligned_ligands() (in module harbor.plotting.ligands)

PoseSelectionSettings (class in harbor.analysis.cross_docking) PoseSelector (class in harbor.analysis.cross_docking) POSITScorer (class in harbor.analysis.cross_docking) POSITScorerSettings (class in harbor.analysis.cross_docking) PredictedMeasurementType (class in harbor.schema.measurement_types) Prediction (class in harbor.schema.data) process_single_bootstrap() (harbor.analysis.cross_docking.Evaluator method) process_structure_batch() (in module harbor.pli.calculate_plip_interactions) ProcessingError ProteinLigandInteraction (class in harbor.pli.plip_analysis_schema) ProteinResidueType (class in harbor.pli.plip_analysis_schema)

R

RandomSplit (class in harbor.analysis.cross_docking) RandomSplitSettings (class in harbor.analysis.cross_docking) ReferenceSplitSettings (class in harbor.analysis.cross_docking) ReferenceStructureSplitBase (class in harbor.analysis.cross_docking) removeprefix() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) removesuffix() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) replace() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) Results (class in harbor.analysis.cross_docking) rfind() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) rgb_to_rgba() (in module harbor.plotting.plotly_utils) rindex() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

rjust() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) RMSDScorer (class in harbor.analysis.cross_docking) RMSDScorerSettings (class in harbor.analysis.cross_docking) rpartition() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) rsplit() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) rstrip() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) run() (harbor.analysis.cross_docking.Evaluator method) (harbor.analysis.cross_docking.ScaffoldSplit method)

S

ScaffoldDateSplit (class in harbor.analysis.cross_docking) ScaffoldSplit (class in harbor.analysis.cross_docking) ScaffoldSplitFlags (class in harbor.analysis.cross_docking) ScaffoldSplitOptions (class in harbor.analysis.cross_docking) ScaffoldSplitSettings (class in harbor.analysis.cross_docking) Scorer (class in harbor.analysis.cross_docking) ScorerSettings (class in harbor.analysis.cross_docking) SettingsBase (class in harbor.analysis.cross_docking) SimilarityScore (class in harbor.pli.plip_analysis_schema) SimilaritySplit (class in harbor.analysis.cross_docking) SimilaritySplitSettings (class in harbor.analysis.cross_docking) SorterBase (class in harbor.analysis.cross_docking) split() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) SplitBase (class in harbor.analysis.cross_docking) splitlines() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

startswith() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) strip() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method) SuccessRate (class in harbor.analysis.cross_docking) SuccessRateSettings (class in harbor.analysis.cross_docking) swapcase() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

T

title() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

to_csv() (harbor.pli.plip_analysis_schema.PLIntReport method) translate() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

U

update_traces() (in module harbor.plotting.plotly_utils) UpdateReferenceSettings (class in harbor.analysis.cross_docking) upper() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)

Z

zfill() (harbor.analysis.cross_docking.DataFrameType method) (harbor.analysis.cross_docking.Operator method) (harbor.analysis.cross_docking.ScaffoldSplitOptions method) (harbor.pli.plip_analysis_schema.AtomType method) (harbor.pli.plip_analysis_schema.FormalCharge method) (harbor.pli.plip_analysis_schema.ProteinResidueType method)